Athok Maarif | SARS-CoV-2 Infection | Best Researcher Award

Published on by Cell Biologist

Mr. Athok Maarif | SARS-CoV-2 Infection | Best Researcher Award

Mr. Athok Maarif, Tottori University, Japan

Athok Shofiudin Maarif is an emerging infectious disease researcher currently pursuing a PhD at the Graduate School of Medical Sciences, Tottori University, Japan. With a foundational background in medicine from Sebelas Maret University, Indonesia, Athok has developed a unique blend of clinical insight and advanced research capabilities. His work spans virology, immunology, microbiology, and antimicrobial resistance. He has co-authored several high-impact publications addressing timely global health challenges, particularly related to COVID-19. Athok is skilled in next-generation sequencing, viral culture, qRT-PCR, and flow cytometry, and he has hands-on experience in BSL-3 environments. He is recognized for his ability to bridge research with public health, earning multiple accolades and fellowships for his contributions to infectious disease control. His cross-cultural collaborations and commitment to translational research mark him as a promising leader in global health research.

Publication Profile: 

Orcid

Scopus

✅ Strengths for the Award:

  1. High-Impact Research Publications:

    • Athok has authored and co-authored peer-reviewed papers in reputable journals such as Frontiers in Immunology, International Journal of Molecular Sciences, Yonago Acta Medica, and Journal of Infection and Chemotherapy.

    • His work is cutting-edge, addressing SARS-CoV-2 viral persistence, immune dynamics during Omicron, and microbiome analysis using next-generation sequencing.

  2. Technical Proficiency:

    • Mastery in NGS, qRT-PCR, flow cytometry, BSL-3 practices, and microbial DNA/RNA extraction.

    • Conducts complex lab work involving viral assays, PBMC isolation, and genomic studies, giving him versatility in laboratory-based infectious disease research.

  3. Strong International and Interdisciplinary Experience:

    • Research assistant roles in both Indonesia and Japan, combining clinical data, molecular science, and public health.

    • Recognized through fellowships and awards by USAID, INDOHUN, and international programs in Vietnam, Thailand, and Japan.

  4. Public Health & Global Health Perspective:

    • Active in One Health programs and waterborne disease prevention, showing ability to translate science into community impact.

    • Leads projects bridging microbiological research with real-world health policy and outreach.

⚙️ Areas for Improvement:

  1. Principal Investigator Role & Independent Research:

    • While he is a key contributor to multiple projects, Athok should aim to lead projects independently (e.g., as first or corresponding author in more papers).

    • Gaining competitive research grants or funding independently would strengthen his research autonomy.

  2. Broaden Beyond SARS-CoV-2:

    • His current research is primarily focused on COVID-19 and related microbiota studies.

    • Expanding into other emerging infectious diseases or antimicrobial resistance pathogens could widen his impact and relevance long-term.

  3. Increase Public and Policy Engagement Outputs:

    • While his research connects to public health, policy briefs, community health publications, or open-access science communication pieces would enhance visibility.

🎓 Education:

Athok Shofiudin Maarif is a PhD candidate in the Infectious Disease Department at the Faculty of Medicine, Tottori University, Japan, where he is expected to graduate in September 2025. His doctoral research focuses on the host-virus interface and antimicrobial resistance, utilizing cutting-edge genomic technologies. He previously earned his medical degree from Sebelas Maret University, Surakarta, Indonesia, graduating in April 2019. His education has emphasized both clinical medicine and research methodology, enabling him to tackle real-world infectious disease issues with scientific rigor. His early exposure to international academic programs, such as internships and short courses in Japan, Vietnam, and Thailand, enriched his global perspective and research aptitude. This educational foundation supports his current success in producing high-impact publications and executing interdisciplinary projects within both clinical and laboratory settings, further validating his dedication to global infectious disease control and scientific discovery.

💼 Professional Experience:

Athok Shofiudin Maarif has diverse experience in both research and field-based public health programs. Since 2021, he has worked as a Research Assistant in the Infectious Disease Department at Tottori University, Japan, where he manages experimental protocols, clinical sample data, and lab logistics involving pathogens at BSL-2/BSL-3 levels. His contributions include data analysis, coordination of laboratory workflow, and execution of molecular diagnostics such as qRT-PCR and viral assays. From 2018 to 2020, he served as a Research Assistant in the Public Health Department at Sebelas Maret University, organizing collaborative projects with government and health organizations in Indonesia. His interdisciplinary roles bridge laboratory and community-based research, underlining his capacity to integrate policy, education, and science in infectious disease management. This hybrid skillset enables him to effectively contribute to global health innovations and strengthens his candidacy for international research honors.

🏅 Awards & Honors:

Athok has received numerous prestigious awards that reflect both his scientific aptitude and social leadership. In 2019, he was named Best Participant in the International Short Course on Ecosystem One-Health in Thailand. He interned at Tottori University’s Infectious Disease Department in 2018 and earned the Best Project Award from USAID-INDOHUN for a community-based waterborne disease initiative. His cross-border engagements include a project on HIV/AIDS awareness for youth in Vietnam and a Research Fellowship under Sebelas Maret University’s Global Challenge Program. Earlier, in 2016, he was awarded Best Oral Presenter at a national HIV-AIDS educational program and recognized in a USAID disease outbreak preparedness course. These accolades showcase his leadership, international collaboration, and dedication to health innovation. His capacity to deliver results in both academic and field environments reflects his strength as a well-rounded researcher and strong candidate for the Best Researcher Award.

🔬 Research Focus:

Athok’s research centers on infectious diseases, particularly at the intersection of virology, immunology, and antimicrobial resistance. His PhD explores host–virus interactions in persistent SARS-CoV-2 infections, including viral evolution and gene expression profiling. He is also investigating the dynamics of natural killer cells during the Omicron phase, providing insights into immune responses. His broader work encompasses the impact of antibiotics like lascufloxacin on gut microbiota, development of rapid PCR diagnostics for COVID-19, and a systematic meta-analysis of antimicrobial resistance trends in Indonesia (2000–2023). He is also comparing resistant bacteria’s genetic profiles between Japan and Indonesia. Athok applies advanced technologies such as next-generation sequencing, flow cytometry, and BSL-3 viral culture techniques to tackle complex microbiological questions. His interdisciplinary, cross-national research approach aims to contribute practical solutions for infectious disease diagnostics, treatment, and public health strategy.

📚 Publications Top Notes:

  1. 🦠 Host–Virus Interface in Persistent SARS-CoV-2 Infections: Viral Characteristic Evolution and Gene Expression Profiling Analysis

  2. 🧪 Distinct Immunity Dynamics of Natural Killer Cells in Mild and Moderate COVID-19 Cases During the Omicron Variant Phase

  3. 🧬 Temporal Effects of Lascufloxacin on Human Gut and Salivary Microbiota: Analysis Using Next-Generation Sequencing Method

  4. 🧫 An Optimal Transport Medium for SARS-CoV-2 Detection in the Direct Method of Rapid Microfluidic PCR System

  5. 💊 Antimicrobial Resistance Trends in Indonesia (2000–2023): A Systematic Review and Meta-Analysis of Bacterial Resistance Across Antibiotic Classes (under review)

  6. 🧻 Comparison of Antimicrobial Resistance Characteristics and Genetic Profiles of Resistant Bacteria in Japan and Indonesia (ongoing)

📝 Conclusion:

Athok Shofiudin Maarif is an exceptionally promising early-career researcher in the field of infectious diseases. His strong international publication record, lab proficiency, and engagement in One Health initiatives make him highly suitable for the Best Researcher Award. His trajectory demonstrates significant leadership potential in translational virology and public health. With further development in grant leadership and broader disease focus, he will continue to emerge as a top-tier researcher in global infectious diseases.

Huiying Fan | Host-Pathogen Interactions | Best Researcher Award

Published on by Cell Biologist

Dr. Huiying Fan | Host-Pathogen Interactions | Best Researcher Award

Dr. Huiying Fan , College of Veterinary Medicine, South China Agricultural University , China

Dr. Huiying Fan is a distinguished professor and doctoral supervisor at the College of Veterinary Medicine, South China Agricultural University, specializing in veterinary virology and immunology. As a core member of the Key Laboratory for Veterinary Vaccine Development, his expertise includes creating genetically engineered vaccines for animal viruses. Dr. Fan has published over 40 research papers in leading journals, including Journal of Virology and Emerging Microbes & Infections, and holds 11 invention patents. His career has been marked by significant contributions to animal virus research and vaccine development, with extensive involvement in national research programs. He has been recognized with several provincial and ministerial-level awards and is actively involved in scientific development and industry collaboration in China.

Publication Profile:

Scopus

Strengths for the Award:

Dr. Huiying Fan has demonstrated exceptional contributions to the field of veterinary virology and immunology, particularly in the development of vaccines for animal viruses. He is a recognized leader in the creation of genetically engineered vaccines, with over 40 SCI papers published in high-impact journals such as Journal of Virology, Emerging Microbes & Infection, and Vaccines. His involvement in groundbreaking research on the pathogenic mechanisms of viruses like avian influenza, porcine epidemic diarrhea, and African swine fever underscores his expertise. Furthermore, Dr. Fan has been granted 11 invention patents and is an influential figure in national research programs, such as the National Key Research and Development Program. His leadership as a professor and mentor, coupled with his ongoing innovations in virus detection and vaccine development, showcases his remarkable impact in the field.

Areas for Improvement:

While Dr. Fan’s scientific research has been groundbreaking, expanding his focus on broader global collaborations could enhance the scope of his work. In particular, his work could benefit from incorporating more interdisciplinary approaches, combining cutting-edge technologies such as artificial intelligence or big data analytics, which are becoming increasingly crucial in disease surveillance and vaccine development. Moreover, his research could further address the application of his vaccine technologies in low-resource settings, to maximize global health impact. Engaging more actively in science communication could also help translate his findings into policies or programs that benefit larger populations, both within China and internationally.

Education:

Dr. Fan completed his Ph.D. in Preventive Veterinary Medicine at the College of Veterinary Medicine, Huazhong Agricultural University, in June 2007. During his doctoral research, he focused on the study of veterinary diseases and virus-host interactions, laying a strong foundation for his future work in vaccine development. His commitment to advancing veterinary science continued through postdoctoral training, followed by his establishment as a professor at South China Agricultural University. His education reflects his dedication to merging academic research with practical applications for the improvement of animal health and disease prevention.

Experience:

Dr. Fan’s career began in 2007 as a professor at South China Agricultural University, where he became a leading figure in veterinary medicine. He has also contributed significantly to international research, evidenced by his six-month research visit to City University of Hong Kong in 2016. As a core member of several high-impact research initiatives, including the National Key Research and Development Program, he has played a vital role in advancing veterinary virology and vaccine development. Dr. Fan’s extensive expertise has led to collaborations across national projects and scientific endeavors, particularly in the realm of infectious diseases and immune responses in animals.

Awards and Honors:

Dr. Fan has received multiple prestigious awards throughout his career, including 8 provincial and ministerial-level honors. Notably, he was named a “Pearl River Science and Technology Star” in Guangzhou and recognized as a “Science and Technology Commissioner” by the People’s Government of Guangdong Province. His contributions to veterinary science have garnered recognition both within China and internationally, highlighting his commitment to scientific excellence and industry collaboration. These accolades underscore his leadership in veterinary vaccine research and his influence on public health initiatives concerning animal diseases.

Research Focus:

Dr. Fan’s primary research interests lie in the molecular design of genetically engineered vaccines for animal viruses, including those affecting poultry and swine. His studies explore the immune mechanisms and pathogenesis of viruses such as avian influenza and porcine viral diarrhea. In addition to his work on vaccine development, he investigates the use of innovative techniques, including CRISPR/Cas12a and proteomics, to better understand virus-host interactions and to improve diagnostic and therapeutic strategies for animal diseases. His focus on veterinary virology aims to enhance both animal and public health outcomes.

Publication Top Notes:

  1. “A single immunization with H5N1 virus-like particle vaccine protects chickens against divergent H5N1 influenza viruses” 🐔🦠
  2. “Influenza H7N9 Virus Hemagglutinin with T169A Mutation Possesses Enhanced Thermostability” 🦠❄️
  3. “Immune Escape Mechanism and Vaccine Research Progress of African Swine Fever Virus” 🐖🦠
  4. “Supplementation of H7N9 Virus-Like Particle Vaccine With Recombinant Epitope Antigen Confers Full Protection” 🦠💉
  5. “PEDV infection affects the expression of polyamine-related genes inhibiting viral proliferation” 🐖🧬
  6. “Proteome Analysis in PAM Cells Reveals That African Swine Fever Virus Can Regulate Intracellular Polyamines” 🧬🔬
  7. “CRISPR/Cas12a Technology Combined with Immunochromatographic Strips for Portable Detection of ASF Virus” 🧬🦠
  8. “Quantitative Proteomics Reveals Changes in Vero Cells in Response to Porcine Epidemic Diarrhea Virus” 🐖🔬
  9. “Coimmunization with recombinant epitope-expressing baculovirus enhances protective effects of H5N1 vaccine” 💉🦠
  10. “Either fadD1 or fadD2, Which Encode acyl-CoA Synthetase, Is Essential for the Survival of Haemophilus parasuis SC096” 🦠🔬
  11. “Two Glycosyltransferase Genes of Haemophilus parasuis SC096 Implicated in Lipooligosaccharide Biosynthesis” 🧬🦠
  12. “Recombinant baculovirus vaccine containing multiple M2e and adjuvant LT induces T cell-dependent protection against H5N1” 💉🦠
  13. “BacMam virus-based surface display of IBV S1 glycoprotein confers strong protection against virulent IBV challenge” 🐔🦠
  14. “Quantitative Proteomics by Amino Acid Labeling in Foot-and-Mouth Disease Virus-Infected Cells” 🐄🧬
  15. “Quantitative proteomics using SILAC reveals protein and pathway regulation in porcine circovirus type 2 infected PK-15 cells” 🐖🧬

Conclusion:

Dr. Huiying Fan is undoubtedly a strong contender for the Research for Best Researcher Award, given his outstanding contributions to animal virus research, innovative vaccine design, and leadership in national research initiatives. His extensive publication record, patent portfolio, and recognition through prestigious awards highlight his scientific excellence. Although expanding his collaborative network and exploring interdisciplinary methodologies could elevate his impact further, Dr. Fan’s work has already had a profound effect on veterinary medicine and public health, making him a well-deserved nominee for this award.