Athok Maarif | SARS-CoV-2 Infection | Best Researcher Award

Published on by Cell Biologist

Mr. Athok Maarif | SARS-CoV-2 Infection | Best Researcher Award

Mr. Athok Maarif, Tottori University, Japan

Athok Shofiudin Maarif is an emerging infectious disease researcher currently pursuing a PhD at the Graduate School of Medical Sciences, Tottori University, Japan. With a foundational background in medicine from Sebelas Maret University, Indonesia, Athok has developed a unique blend of clinical insight and advanced research capabilities. His work spans virology, immunology, microbiology, and antimicrobial resistance. He has co-authored several high-impact publications addressing timely global health challenges, particularly related to COVID-19. Athok is skilled in next-generation sequencing, viral culture, qRT-PCR, and flow cytometry, and he has hands-on experience in BSL-3 environments. He is recognized for his ability to bridge research with public health, earning multiple accolades and fellowships for his contributions to infectious disease control. His cross-cultural collaborations and commitment to translational research mark him as a promising leader in global health research.

Publication Profile: 

Orcid

Scopus

✅ Strengths for the Award:

  1. High-Impact Research Publications:

    • Athok has authored and co-authored peer-reviewed papers in reputable journals such as Frontiers in Immunology, International Journal of Molecular Sciences, Yonago Acta Medica, and Journal of Infection and Chemotherapy.

    • His work is cutting-edge, addressing SARS-CoV-2 viral persistence, immune dynamics during Omicron, and microbiome analysis using next-generation sequencing.

  2. Technical Proficiency:

    • Mastery in NGS, qRT-PCR, flow cytometry, BSL-3 practices, and microbial DNA/RNA extraction.

    • Conducts complex lab work involving viral assays, PBMC isolation, and genomic studies, giving him versatility in laboratory-based infectious disease research.

  3. Strong International and Interdisciplinary Experience:

    • Research assistant roles in both Indonesia and Japan, combining clinical data, molecular science, and public health.

    • Recognized through fellowships and awards by USAID, INDOHUN, and international programs in Vietnam, Thailand, and Japan.

  4. Public Health & Global Health Perspective:

    • Active in One Health programs and waterborne disease prevention, showing ability to translate science into community impact.

    • Leads projects bridging microbiological research with real-world health policy and outreach.

⚙️ Areas for Improvement:

  1. Principal Investigator Role & Independent Research:

    • While he is a key contributor to multiple projects, Athok should aim to lead projects independently (e.g., as first or corresponding author in more papers).

    • Gaining competitive research grants or funding independently would strengthen his research autonomy.

  2. Broaden Beyond SARS-CoV-2:

    • His current research is primarily focused on COVID-19 and related microbiota studies.

    • Expanding into other emerging infectious diseases or antimicrobial resistance pathogens could widen his impact and relevance long-term.

  3. Increase Public and Policy Engagement Outputs:

    • While his research connects to public health, policy briefs, community health publications, or open-access science communication pieces would enhance visibility.

🎓 Education:

Athok Shofiudin Maarif is a PhD candidate in the Infectious Disease Department at the Faculty of Medicine, Tottori University, Japan, where he is expected to graduate in September 2025. His doctoral research focuses on the host-virus interface and antimicrobial resistance, utilizing cutting-edge genomic technologies. He previously earned his medical degree from Sebelas Maret University, Surakarta, Indonesia, graduating in April 2019. His education has emphasized both clinical medicine and research methodology, enabling him to tackle real-world infectious disease issues with scientific rigor. His early exposure to international academic programs, such as internships and short courses in Japan, Vietnam, and Thailand, enriched his global perspective and research aptitude. This educational foundation supports his current success in producing high-impact publications and executing interdisciplinary projects within both clinical and laboratory settings, further validating his dedication to global infectious disease control and scientific discovery.

💼 Professional Experience:

Athok Shofiudin Maarif has diverse experience in both research and field-based public health programs. Since 2021, he has worked as a Research Assistant in the Infectious Disease Department at Tottori University, Japan, where he manages experimental protocols, clinical sample data, and lab logistics involving pathogens at BSL-2/BSL-3 levels. His contributions include data analysis, coordination of laboratory workflow, and execution of molecular diagnostics such as qRT-PCR and viral assays. From 2018 to 2020, he served as a Research Assistant in the Public Health Department at Sebelas Maret University, organizing collaborative projects with government and health organizations in Indonesia. His interdisciplinary roles bridge laboratory and community-based research, underlining his capacity to integrate policy, education, and science in infectious disease management. This hybrid skillset enables him to effectively contribute to global health innovations and strengthens his candidacy for international research honors.

🏅 Awards & Honors:

Athok has received numerous prestigious awards that reflect both his scientific aptitude and social leadership. In 2019, he was named Best Participant in the International Short Course on Ecosystem One-Health in Thailand. He interned at Tottori University’s Infectious Disease Department in 2018 and earned the Best Project Award from USAID-INDOHUN for a community-based waterborne disease initiative. His cross-border engagements include a project on HIV/AIDS awareness for youth in Vietnam and a Research Fellowship under Sebelas Maret University’s Global Challenge Program. Earlier, in 2016, he was awarded Best Oral Presenter at a national HIV-AIDS educational program and recognized in a USAID disease outbreak preparedness course. These accolades showcase his leadership, international collaboration, and dedication to health innovation. His capacity to deliver results in both academic and field environments reflects his strength as a well-rounded researcher and strong candidate for the Best Researcher Award.

🔬 Research Focus:

Athok’s research centers on infectious diseases, particularly at the intersection of virology, immunology, and antimicrobial resistance. His PhD explores host–virus interactions in persistent SARS-CoV-2 infections, including viral evolution and gene expression profiling. He is also investigating the dynamics of natural killer cells during the Omicron phase, providing insights into immune responses. His broader work encompasses the impact of antibiotics like lascufloxacin on gut microbiota, development of rapid PCR diagnostics for COVID-19, and a systematic meta-analysis of antimicrobial resistance trends in Indonesia (2000–2023). He is also comparing resistant bacteria’s genetic profiles between Japan and Indonesia. Athok applies advanced technologies such as next-generation sequencing, flow cytometry, and BSL-3 viral culture techniques to tackle complex microbiological questions. His interdisciplinary, cross-national research approach aims to contribute practical solutions for infectious disease diagnostics, treatment, and public health strategy.

📚 Publications Top Notes:

  1. 🦠 Host–Virus Interface in Persistent SARS-CoV-2 Infections: Viral Characteristic Evolution and Gene Expression Profiling Analysis

  2. 🧪 Distinct Immunity Dynamics of Natural Killer Cells in Mild and Moderate COVID-19 Cases During the Omicron Variant Phase

  3. 🧬 Temporal Effects of Lascufloxacin on Human Gut and Salivary Microbiota: Analysis Using Next-Generation Sequencing Method

  4. 🧫 An Optimal Transport Medium for SARS-CoV-2 Detection in the Direct Method of Rapid Microfluidic PCR System

  5. 💊 Antimicrobial Resistance Trends in Indonesia (2000–2023): A Systematic Review and Meta-Analysis of Bacterial Resistance Across Antibiotic Classes (under review)

  6. 🧻 Comparison of Antimicrobial Resistance Characteristics and Genetic Profiles of Resistant Bacteria in Japan and Indonesia (ongoing)

📝 Conclusion:

Athok Shofiudin Maarif is an exceptionally promising early-career researcher in the field of infectious diseases. His strong international publication record, lab proficiency, and engagement in One Health initiatives make him highly suitable for the Best Researcher Award. His trajectory demonstrates significant leadership potential in translational virology and public health. With further development in grant leadership and broader disease focus, he will continue to emerge as a top-tier researcher in global infectious diseases.

Alexej Abyzov | Gene Regulation Epigenetics | Best Researcher Award

Published on by Cell Biologist

Dr. Alexej Abyzov | Gene Regulation Epigenetics | Best Researcher Award

Dr. Alexej Abyzov , Mayo Clinic , United States

Dr. Alexej Abyzov is an Associate Professor of Biomedical Informatics at the Mayo College of Medicine and a consultant at the Mayo Clinic’s Department of Quantitative Health Sciences. He is also an adjunct professor at Yale University and a graduate faculty member at the University of Minnesota. Dr. Abyzov’s research focuses on computational biology and bioinformatics, particularly in understanding genomic variability, somatic mosaicism, and the genetic basis of neurodevelopmental disorders. He has made substantial contributions to the study of human genome structure and its impact on health. Dr. Abyzov has led numerous research projects funded by NIH and has published extensively in high-impact journals. He is a respected speaker, having presented at international conferences and workshops. Beyond his research, Dr. Abyzov is involved in mentorship and community service, contributing to education and outreach efforts in science and technology.

Publication Profile:

Google Scholar

Strengths for the Award:

Dr. Alexej Abyzov’s work exemplifies excellence in the field of Biomedical Informatics and Computational Biology. His remarkable research contributions span areas such as genetic variation, neurodevelopment, and the understanding of neuropsychiatric diseases. He has been an integral part of cutting-edge projects like investigating somatic mosaicism in schizophrenia and modeling autism in organoids. His ability to bridge the gap between computational techniques and biological applications is demonstrated in his extensive list of high-impact publications, many of which have been published in top-tier journals like Science and Nature. Furthermore, his leadership role in symposia and collaborations with renowned institutions such as Yale University and the University of Minnesota showcases his influence in the scientific community.

Areas for Improvement:

Although Dr. Abyzov has an impressive track record, expanding the outreach of his work into more interdisciplinary collaborations and ensuring greater engagement with clinical applications could enhance the direct societal impact of his findings. Additionally, increasing public-facing communication of his research could foster more public awareness and policy implications, given the importance of his work in understanding neurodevelopmental and psychiatric disorders

Education:

Dr. Alexej Abyzov holds a Ph.D. in Biomedical Informatics, which laid the foundation for his career in computational biology. He began his academic journey with a focus on bioinformatics, later earning a tenure-track faculty position in 2014 at Mayo College of Medicine. In 2020, he was promoted to Associate Professor in Biomedical Informatics. Dr. Abyzov is also an adjunct professor at Yale University’s Child Study Center, where he continues to collaborate on research projects involving neurodevelopmental disorders. Throughout his academic career, Dr. Abyzov has been involved in shaping educational curricula and mentoring students and researchers, providing opportunities for both hands-on research and professional development. He has served as a graduate faculty member at the University of Minnesota, emphasizing his broad academic influence. His educational background is complemented by ongoing work in the development of new bioinformatics tools and approaches for genomics research.

Experience:

Dr. Alexej Abyzov’s career has been marked by continuous growth and contributions in the field of biomedical informatics. He is currently an Associate Professor at Mayo College of Medicine and a Consultant in the Department of Quantitative Health Sciences at Mayo Clinic. Since 2016, he has also served as an adjunct professor at Yale University and has been a part of the Graduate Faculty at the University of Minnesota. His experience includes supervising summer interns, Ph.D. students, and post-doctoral fellows. Dr. Abyzov’s work in bioinformatics has helped lead groundbreaking studies on somatic mosaicism, genetic mutations, and neurodevelopmental disorders. He has actively participated in a number of international collaborations, including co-chairing a symposium at the Molecular Psychiatry Association and providing consulting services for personalized medicine projects. Through his diverse teaching and research roles, Dr. Abyzov has significantly advanced the field of computational biology and genomics.

Awards and Honors:

Dr. Alexej Abyzov has received numerous accolades throughout his career, reflecting his significant contributions to the field of biomedical informatics. He was elected as a member of the New York Academy of Sciences in 2008, a prestigious recognition for his early career achievements. In 2007, he became a member of The Honor Society of Phi Kappa Phi, acknowledging his academic excellence. Dr. Abyzov was also inducted into the International Society for Computational Biology (ISCB) in 2005, further solidifying his position as a leader in the field of bioinformatics. These recognitions underscore his dedication to advancing scientific knowledge, especially in genomics and computational biology. Dr. Abyzov’s honors serve as a testament to his ability to drive meaningful research, collaborate with other leading scientists, and contribute to educational initiatives, all while maintaining a strong commitment to community outreach and mentorship.

Research Focus:

Dr. Alexej Abyzov’s research focuses on bioinformatics, computational biology, and human genomics, with an emphasis on understanding the role of genetic and somatic mutations in health and disease. His work has greatly advanced the understanding of somatic mosaicism, particularly in neurodevelopmental disorders like autism spectrum disorder and Tourette syndrome. He is also deeply involved in exploring the molecular mechanisms behind genetic mutations in the brain, investigating how these mutations may contribute to mental health disorders such as schizophrenia. Dr. Abyzov is known for developing innovative tools and methodologies for analyzing large-scale genomic data, including CNVpytor and CRISPR-Cas editing. His research also explores transgenerational transmission of mutations, revealing insights into how genetic variations are passed down through generations. By combining computational biology with experimental data, Dr. Abyzov’s work provides critical insights into the genetic basis of complex diseases, offering potential pathways for personalized medicine and targeted treatments.

Publications Top Notes:

  1. Interneuron loss and microglia activation in Tourette disorder 🔬🧠 (2025)

  2. Transgenerational transmission of post-zygotic mutations in human germline 🔬👶🧬 (2024)

  3. Somatic mosaicism in schizophrenia reveals prenatal mutational processes 🧠🧬 (2024)

  4. Genome-wide analysis of copy number with CNVpytor in igv.js 💻📊 (2024)

  5. Resolving the 22q11.2 deletion with CTLR-Seq 🧬🔍 (2024)

  6. Characterization of enhancer activity using MPRA and forebrain organoids 🧬🔬 (2024)

  7. Genomic resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases 🧠🧬 (2023)

  8. Modeling idiopathic autism in forebrain organoids reveals imbalances in excitatory neurons 👶🧠 (2023)

  9. Clonally Selected Lines After CRISPR-Cas Editing Are Not Isogenic 🧬⚙️ (2023)

  10. Efficient reconstruction of cell lineage trees for cancer and cell ancestry 🧬🧪 (2023)

Conclusion:

Dr. Alexej Abyzov is an ideal candidate for the Research for Best Researcher Award due to his profound contributions to the understanding of genetic and somatic variation, his leadership in major collaborative research efforts, and his ongoing influence in shaping the field of Biomedical Informatics. His ongoing work and future potential make him a standout figure for this prestigious recognition.